Package: adephylo 1.1-16

Aurélie Siberchicot

adephylo: Exploratory Analyses for the Phylogenetic Comparative Method

Multivariate tools to analyze comparative data, i.e. a phylogeny and some traits measured for each taxa. The package contains functions to represent comparative data, compute phylogenetic proximities, perform multivariate analysis with phylogenetic constraints and test for the presence of phylogenetic autocorrelation. The package is described in Jombart et al (2010) <doi:10.1093/bioinformatics/btq292>.

Authors:Stéphane Dray [aut], Thibaut Jombart [aut], Anders Ellern Bilgrau [ctb], Aurélie Siberchicot [ctb, cre]

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adephylo.pdf |adephylo.html✨
adephylo/json (API)

# Install 'adephylo' in R:
install.packages('adephylo', repos = c('https://adeverse.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/adeverse/adephylo/issues

Datasets:
  • carni19 - Phylogeny and quantative trait of carnivora
  • carni70 - Phylogeny and quantitative traits of carnivora
  • lizards - Phylogeny and quantitative traits of lizards
  • maples - Phylogeny and quantitative traits of flowers
  • mjrochet - Phylogeny and quantitative traits of teleos fishes
  • palm - Phylogenetic and quantitative traits of amazonian palm trees
  • procella - Phylogeny and quantitative traits of birds
  • tithonia - Phylogeny and quantitative traits of flowers
  • ungulates - Phylogeny and quantitative traits of ungulates.

On CRAN:

9.68 score 9 stars 4 packages 308 scripts 4.7k downloads 42 mentions 16 exports 88 dependencies

Last updated 4 months agofrom:d234d0d04f. Checks:OK: 7 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 16 2024
R-4.5-win-x86_64NOTENov 16 2024
R-4.5-linux-x86_64NOTENov 16 2024
R-4.4-win-x86_64OKNov 16 2024
R-4.4-mac-x86_64OKNov 16 2024
R-4.4-mac-aarch64OKNov 16 2024
R-4.3-win-x86_64OKNov 16 2024
R-4.3-mac-x86_64OKNov 16 2024
R-4.3-mac-aarch64OKNov 16 2024

Exports:.tipToRootabouheif.moranbullseyedistRootdistTipslistDDlistTipsme.phylomoran.idxorthobasis.phyloorthogramppcaproxTipssp.tipstable.phylo4dtreePart

Dependencies:ade4adegenetapeaskpassbase64encbootbslibcachemcliclustercolorspacecommonmarkcpp11crayoncurldigestdplyrfansifarverfastmapfontawesomefsgenericsggplot2gluegtablehmshtmltoolshttpuvhttrigraphisobandjquerylibjsonlitelabelinglaterlatticelifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopensslpermutephylobasepillarpixmappkgconfigplyrprettyunitsprogresspromisespurrrR6rappdirsRColorBrewerRcppRcppArmadilloreshape2rlangrnclRNeXMLsassscalessegmentedseqinrshinysourcetoolsspstringistringrsystibbletidyrtidyselectutf8uuidvctrsveganviridisLitewithrXMLxml2xtable

adephylo: exploratory analyses for the phylogenetic comparative method

Rendered fromadephylo.Rnwusingutils::Sweaveon Nov 16 2024.

Last update: 2023-10-03
Started: 2015-08-25